Another update:
Got paid today, so I took the car by MaxV to have the new 50Resto quick release clutch quadrant installed. Turns out, we forgot to put a T56 clutch cable on when Tim did the swap so they installed that also. Clutch engagement is now at the perfect spot in the pedal travel. Now the TOB isn't being touched by the clutch fork when it's not supposed to and it's not spinning all the time anymore lol, so it's quieter.
I also had a high idle issue that isn't tune related. It would idle at 1,200RPM's whiled stopped and in neutral coming to a stop sometimes and there was nothing that would bring the RPM's down So I cleaned to the throttle body per Tracy's advice. Once I cleaned the TB I turned the car on and it now idles at 1,400RPM's, and once again, they won't come down.
I than disconnected the connector to the TPS and the RPM's dropped to 1,000RPM's. So I'm thinking that the TPS is bad because one, it's the original TPS, and second, just like the IAC, the TPS can go bad after awhile due to the heat. I'm waiting on Tim to call to talk to him and see what he thinks.